PPDB

PPDB	The Plant Proteome Database

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AT3G13224.1 RNA-binding (RRM/RBD/RNP motifs) family protein

Lab Annot.

RNA recognition motif (RRM)-containing protein
Mapman: 27.4 RNA.RNA binding

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G13224.2 11 Arabidopsis thaliana 2E-129 184 98 98 2 (1) _
AT3G13224.3 11 Arabidopsis thaliana 2E-114 165 98 98 0 (0) _
AT5G40490.1 11 Arabidopsis thaliana 2E-73 175 65 81 22 (7) _
Os08g23120.1 7 Oryza sativa 7E-82 172 71 84 4 (4) _
Os08g38410.3 7 Oryza sativa 3E-75 165 66 83 0 (0) _
Os08g38410.1 7 Oryza sativa 1E-72 161 66 83 0 (0) _
GRMZM2G050218_P02 3.21 Zea mays 1E-87 166 72 88 4 (4) _
v1_GRMZM2G050218_P02 4a53 Zea mays 1E-87 166 72 88 10 (10) _
Zm00001eb199330_P003 agpv5 Zea mays 2E-84 168 70 87 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	BRAP2(1) Ish1(1) NID(2) Nup35_RRM(2) Nup35_RRM_2(2) OB_RNB(2) PHM7_cyt(3) RRM_1(
TargetP:	Cytoplasm (Class 2 C0.070; M0.253; S0.086; _0.853)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:
TAT position:
Length	231 aa (-cTP 179)
Molecular Weight	26.14 kDA(-cTP )
PI	6.60(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19525416(leaf (wt and clpr4-1 mutant))
19253305(phosphoproteins (etiolated seedling))
19376835(leaf phosphoproteins)
21166475(cytosolic-fractions-crude)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data