PPDB

 The Plant Proteome Database

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AT3G12860.1   NOP56-like pre RNA processing ribonucleoprotein
Lab Annot. NOP56-like pre RNA processing ribonucleoprotein
Mapman: 28.1 DNA.synthesis/chromatin structure
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G56110.1 11Arabidopsis thaliana0442909778 (70)_
AT5G27120.1 11Arabidopsis thaliana3E-114409466423 (20)_
AT3G05060.1 11Arabidopsis thaliana4E-112409456541 (39)_
Os03g22880.1 7Oryza sativa0445768718 (18)_
Os07g46720.2 7Oryza sativa7E-17530974850 (0)_
Os07g46720.1 7Oryza sativa7E-17530974850 (0)_
v1_GRMZM2G144995_P01 4a53Zea mays0431799065 (65)_
GRMZM2G144995_P01 3.21Zea mays0431799068 (31)_
Zm00001eb016970_P003 agpv5Zea mays043179900 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: CDC45(1) Cdh1_DBD_1(1) Nop(1) NOP5NT(1) RNA_polI_A34(1)
TargetP: Cytoplasm (Class 2 C0.182; M0.066; S0.039; _0.795)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 499 aa (-cTP 435)
Molecular Weight 56.18 kDA(-cTP )
PI 8.87(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type
873Detail       leaf [A. thaliana] chloroplast stromawild-type

* For details about the exprimental sources click here.

Published Proteomics Data

 19114538(guard cells Arabidopsis leaf)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help