PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G12640.1   RNA binding (RRM/RBD/RNP motifs) family protein

Lab Annot. RNA binding (RRM/RBD/RNP motifs) protein
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G12640.3 11Arabidopsis thaliana066296960 (0)_
AT3G12640.2 11Arabidopsis thaliana066296960 (0)_
AT3G12640.4 11Arabidopsis thaliana066291910 (0)_
Os04g39629.1 7Oryza sativa9E-4520449620 (0)_
Os08g39440.2 7Oryza sativa4E-4416654680 (0)_
Os08g39440.1 7Oryza sativa3E-3919147590 (0)_
GRMZM2G181453_P01 3.21Zea mays2E-9271935500 (0)_
v1_GRMZM2G181453_P01 4a53Zea mays2E-92719355013 (13)_
Zm00001eb424740_P002 agpv5Zea mays2E-9271935500 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: AROS(1) DUF1617(3) Nup35_RRM(1) Nup35_RRM_2(1) PWI(1) RRM_1(1)
TargetP: Cytoplasm (Class 2 C0.114; M0.122; S0.092; _0.915)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 638 aa (-cTP 613)
Molecular Weight 70.10 kDA(-cTP )
PI 9.11(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2317Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19376835(leaf phosphoproteins)
20733066(phosphoproteome-ABA-leaf)
20813957(SUMO proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help