PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT3G11960.1 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein

Lab Annot.

Mapman: 27.1.1 RNA.processing.splicing

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G11960.3 11 Arabidopsis thaliana 0 1379 100 100 0 (0) C
AT3G11960.4 11 Arabidopsis thaliana 0 1379 98 98 0 (0) C
AT3G11960.2 11 Arabidopsis thaliana 0 1387 94 94 0 (0) C
Os07g10390.1 7 Oryza sativa 0 997 52 70 0 (0) _
Os02g04480.1 7 Oryza sativa 7E-30 933 21 39 33 (33) _
Os05g51480.2 7 Oryza sativa 1E-25 629 22 42 39 (39) _
Zm00001eb302880_P001 agpv5 Zea mays 0 1369 49 67 0 (0) C
GRMZM2G091449_P01 3.21 Zea mays 0 1369 49 67 0 (0) C
v1_GRMZM2G091449_P01 4a53 Zea mays 0 1369 49 67 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CPSF_A(2) MMS1_N(1)
TargetP:	Chloroplast (Class 3 C0.925; M0.030; S0.016; _0.328)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1379 aa (-cTP 1331)
Molecular Weight	151.85 kDA(-cTP 147.08)
PI	5.24(-cTP 5.26)

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data