PPDB

PPDB	The Plant Proteome Database

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AT3G11950.1 TRAF-like superfamily protein

Lab Annot.

this gene was split from At3g11945
Mapman: 35 not assigned

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G11950.5 11 Arabidopsis thaliana 0 572 100 100 0 (0) _
AT3G11950.4 11 Arabidopsis thaliana 0 572 100 100 0 (0) _
AT3G11950.3 11 Arabidopsis thaliana 0 572 100 100 0 (0) _
Os05g23950.1 7 Oryza sativa 1E-101 335 44 66 0 (0) _
Os04g14190.1 7 Oryza sativa 6E-101 335 44 66 0 (0) _
Os12g08070.1 7 Oryza sativa 1E-100 335 43 65 0 (0) _
v1_GRMZM2G314707_P01 4a53 Zea mays 8E-100 319 43 66 0 (0) _
GRMZM2G314707_P01 3.21 Zea mays 8E-100 319 43 66 0 (0) _
Zm00001eb093630_P004 agpv5 Zea mays 8E-100 319 43 66 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Sina(3) zf-tcix(1) zf-TRAF(2) zf-TRAF_2(2)
TargetP:	Cytoplasm (Class 2 C0.231; M0.118; S0.057; _0.925)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:	7 TMs
TAT position:
Length	572 aa (-cTP 510)
Molecular Weight	64.23 kDA(-cTP )
PI	4.62(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
342	Detail								leaf [A. thaliana]	chloroplast low density membrane	wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

15028209(Total chloroplast)
12766230(Total chloroplast envelope)
18431481(chloroplast)
19546170(mature pollen grains)
19334764(plasma membrane (cell culture))
20706207(contaminants cell cycle interactome (cell culture))
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)

Comparative Proteomics Data