PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT3G11560.1 LETM1-like protein

Lab Annot.

unknown protein (PG in mutant?)
Mapman: 35.2 not assigned.unknown

Curated Location

envelope (Pubmed: 23198870 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G11560.5 11 Arabidopsis thaliana 0 619 100 100 0 (0) C
AT3G11560.3 11 Arabidopsis thaliana 0 609 100 100 41 (31) C
AT3G11560.2 11 Arabidopsis thaliana 0 609 100 100 41 (31) C
Os08g37610.1 7 Oryza sativa 0 552 57 73 10 (10) _
Os08g37610.2 7 Oryza sativa 0 529 57 73 10 (10) _
Zm00001eb033410_P004 agpv5 Zea mays 0 591 54 70 0 (0) _
Zm00001eb033410_P005 agpv5 Zea mays 0 591 54 70 0 (0) C
Zm00001eb033410_P002 agpv5 Zea mays 0 587 54 70 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:
TargetP:	Chloroplast (Class 5 C0.573; M0.392; S0.002; _0.058)
Predotar:
Subcel. Location:	Lumen
TM-HMM prediction:	No
Aramemnon:	2 TMs
TAT position:
Length	619 aa (-cTP 588) (-lTP 544)
Molecular Weight	69.68 kDA(-cTP 66.37)(-lTP 61.25)
PI	8.32(-cTP 7.25)(-lTP 5.922)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
342	Detail								leaf [A. thaliana]	chloroplast low density membrane	wild-type
877	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
1395	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1396	Detail								leaf [A. thaliana]	total leaf tissue	clpt1xclpt2 (rep. 2)
1399	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1401	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1422	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 2)
1424	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 1)
1933	Detail								leaf [A. thaliana]	chloroplast	wild-type
1983	Detail								leaf [A. thaliana]	plastid	wild-type
1984	Detail								leaf [A. thaliana]	plastid	wild-type
1986	Detail								leaf [A. thaliana]	plastid	Prep1_Prep2
2009	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2010	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2012	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2013	Detail								leaf [A. thaliana]	total leaf tissue	wt
2020	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

12938931(Total chloroplast envelope)
18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
21515685(GreenCut2)

Comparative Proteomics Data