PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G11530.1   Vacuolar protein sorting 55 (VPS55) family protein
Lab Annot.
Mapman: 29.3.4.3 protein.targeting.secretory pathway.vacuole
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G11530.2 11Arabidopsis thaliana3E-791131001000 (0)S
AT3G11530.3 11Arabidopsis thaliana1E-62921001000 (0)S
AT1G32410.2 11Arabidopsis thaliana5E-3510450751 (1)S
Os01g73570.2 7Oryza sativa5E-6811382920 (0)S
Os02g55980.1 7Oryza sativa2E-3411347710 (0)S
v1_GRMZM2G174221_P02 4a53Zea mays2E-6711381920 (0)S
v1_GRMZM2G174221_P01 4a53Zea mays2E-6711381920 (0)S
GRMZM2G174221_P02 3.21Zea mays2E-6711381921 (1)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Vps55(1)
TargetP: Secreted (Class 1 C0.015; M0.072; S0.948; _0.029)
Predotar:
Subcel. Location:
TM-HMM prediction: 3 TMs
Aramemnon: 3 TMs
TAT position:
Length 113 aa (-cTP 101)
Molecular Weight 12.47 kDA(-cTP )
PI 4.91(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

 15539469(vacuole)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help