PPDB

The Plant Proteome Database

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AT3G11500.1   Small nuclear ribonucleoprotein family protein

Lab Annot. small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative
Mapman: 27.1 RNA.processing
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G11500.2 11Arabidopsis thaliana4E-52791001000 (0)_
AT2G23930.1 11Arabidopsis thaliana5E-517997985 (5)_
AT2G23930.2 11Arabidopsis thaliana8E-305396984 (4)_
Os03g29740.1 7Oryza sativa3E-477988970 (0)_
Os07g41790.2 7Oryza sativa7E-306180935 (5)S
Os08g08040.1 7Oryza sativa4E-1171436322 (22)_
GRMZM2G083642_P02 3.21Zea mays3E-4879899713 (13)_
GRMZM2G057865_P01 3.21Zea mays5E-4879889719 (19)_
v1_GRMZM2G057865_P01 4a53Zea mays5E-4879889718 (18)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: LSM(1) NotI(1)
TargetP: Cytoplasm (Class 4 C0.142; M0.282; S0.107; _0.677)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 79 aa (-cTP 36)
Molecular Weight 8.75 kDA(-cTP )
PI 8.06(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1351Detail       leaf [A. thaliana] total tissue t1-t2
1356Detail       leaf [A. thaliana] total tissue - low mass region wild-type
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
2255Detail       leaf [A. thaliana] total seedlings gfs9
2256Detail       leaf [A. thaliana] total seedlings gfs9
2257Detail       leaf [A. thaliana] total seedlings gfs9
2259Detail       leaf [A. thaliana] total seedlings gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

15496452(nucleolus)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help