PPDB

 The Plant Proteome Database

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AT3G11170.1   fatty acid desaturase 7
Lab Annot. Plastidial Linoleate Desaturase (FAD7/FAD8) (Lipid Gene Database: Beisson)
Mapman: 11.2.3 lipid metabolism.FA desaturation.omega 3 desaturase
Curated Location envelope-inner-integral (Pubmed: 23198870 18431481 )

TAIR curated location: plastid membrane9368411
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G05580.1 11Arabidopsis thaliana044680854 (0)C
AT5G05580.2 11Arabidopsis thaliana039180850 (0)C
AT2G29980.1 11Arabidopsis thaliana035869830 (0)_
Os03g18070.1 7Oryza sativa0458647549 (49)M
Os07g49310.1 7Oryza sativa037773834 (4)M
Os12g01370.1 7Oryza sativa036368790 (0)_
GRMZM2G129209_P01 3.21Zea mays0354768520 (20)M
Zm00001eb013340_P002 agpv5Zea mays044962730 (0)M
GRMZM2G074401_P01 3.21Zea mays0317768893 (93)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF3474(1) FA_desaturase(1)
TargetP: Chloroplast (Class 2 C0.905; M0.134; S0.003; _0.042)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 3 TMs
Aramemnon: 4 TMs
TAT position:
Length 446 aa (-cTP 365) (-lTP 314)
Molecular Weight 51.17 kDA(-cTP 42.18)(-lTP 36.43)
PI 8.15(-cTP 7.25)(-lTP 6.847)

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
342Detail       leaf [A. thaliana] chloroplast low density membranewild-type
877Detail       leaf [A. thaliana] chloroplast stromawild-type
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1744Detail        [A. thaliana] Mep-6
1765Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
1829Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Fluctuating light
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

 12938931(Total chloroplast envelope)
12766230(Total chloroplast envelope)
18431481(chloroplast)
19200160(flower-stage 12)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
19114538(guard cells Arabidopsis leaf)
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help