PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G10420.1   P-loop containing nucleoside triphosphate hydrolases superfamily protein
Lab Annot. SPD1 (seedling plastid development 1) (claimed in intermembrane envelope space)
Mapman: 35.1 not assigned.no ontology
Curated Location plastid (Pubmed: 23198870 21045120 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G10420.2 11Arabidopsis thaliana054010010027 (26)C
AT1G73170.3 11Arabidopsis thaliana4E-16646053720 (0)C
AT1G73170.1 11Arabidopsis thaliana6E-166460537243 (35)C
Os07g08970.1 7Oryza sativa050564760 (0)C
Os06g06190.1 7Oryza sativa1E-16444855730 (0)C
Os12g10640.1 7Oryza sativa4E-11631657734 (4)C
Zm00001eb116580_P004 agpv5Zea mays050464750 (0)C
v1_GRMZM2G147819_P01 4a53Zea mays050464755 (5)C
GRMZM2G147819_P01 3.21Zea mays0504647557 (21)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: AAA(1) AAA_11(1) AAA_14(1) AAA_16(1) AAA_18(1) AAA_19(1) AAA_2(1) AAA_22(1) AAA_
TargetP: Chloroplast (Class 2 C0.841; M0.234; S0.002; _0.008)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 547 aa (-cTP 469)
Molecular Weight 60.02 kDA(-cTP 51.58)
PI 5.74(-cTP 5.18)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
542Detail       leaf [A. thaliana] stroma (FPLC) >500 kDa (HMB) wild-type
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
1196Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1544Detail       leaf [A. thaliana] TiO2 thylakoid membranek1xk3
1639Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1
2112Detail       leaf [A. thaliana] Stroma stromawt
2114Detail       leaf [A. thaliana] Stroma stromawt
2115Detail       leaf [A. thaliana] Stroma stromacGep
2116Detail       leaf [A. thaliana] Stroma stromacGep

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
18436743(specific to leaves)
17216043(leaf)
20423899(chloroplast)
20733066(phosphoproteome-ABA-leaf)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help