PPDB

 The Plant Proteome Database

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AT3G10330.1   Cyclin-like family protein
Lab Annot. transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)
Mapman: 27.2 RNA.transcription
Curated Location
TAIR curated location: nucleus & cytoplasm15610358
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G41630.1 11Arabidopsis thaliana031285925 (1)_
AT3G29380.1 11Arabidopsis thaliana9E-8432044611 (1)_
AT3G57370.1 11Arabidopsis thaliana2E-5037033480 (0)M
Os09g36440.1 7Oryza sativa031284930 (0)_
Os05g47480.1 7Oryza sativa5E-9430749660 (0)_
Os03g09820.1 7Oryza sativa1E-8629248640 (0)_
v1_GRMZM2G091586_P03 4a53Zea mays0312839211 (11)_
Zm00001eb319760_P003 agpv5Zea mays031283920 (0)_
Zm00001eb319760_P002 agpv5Zea mays031283920 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Cyclin_N(2) DZR_2(1) RB_B(2) Ribosomal_S27e(1) TF_Zn_Ribbon(1) TFIIB(2) zf-ribbo
TargetP: Cytoplasm (Class 1 C0.076; M0.062; S0.081; _0.887)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 312 aa (-cTP 254)
Molecular Weight 34.22 kDA(-cTP )
PI 6.26(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)

* For details about the exprimental sources click here.

Published Proteomics Data

 21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help