PPDB

 The Plant Proteome Database

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AT3G10300.3   Calcium-binding EF-hand family protein
Lab Annot. calcium-binding EF hand protein
Mapman: 30.3 signalling.calcium
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G10300.6 11Arabidopsis thaliana032893940 (0)_
AT3G10300.4 11Arabidopsis thaliana02951001007 (6)_
AT3G10300.2 11Arabidopsis thaliana030198987 (6)_
Os11g04480.1 7Oryza sativa7E-126297667621 (21)_
Os12g04240.1 7Oryza sativa8E-123290677521 (21)_
Os12g04240.2 7Oryza sativa7E-94250647317 (17)_
v1_GRMZM2G357595_P01 4a53Zea mays7E-113304637110 (10)_
Zm00001eb196390_P001 agpv5Zea mays7E-11330463710 (0)_
Zm00001eb196390_P002 agpv5Zea mays7E-11330463710 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: EF-hand_1(2) EF-hand_5(2) EF-hand_6(2) EF-hand_7(2) EF-hand_8(2) LEM(2)
TargetP: Cytoplasm (Class 5 C0.501; M0.106; S0.015; _0.596)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 335 aa (-cTP 263)
Molecular Weight 35.30 kDA(-cTP )
PI 6.37(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help