PPDB

 The Plant Proteome Database

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AT3G10270.1   DNA gyrase subunit B
Lab Annot. DNA gyrase B1 - dual targeted plastids and mitochondria
Mapman: 28.2 DNA.repair
Curated Location mitochondria (Pubmed: 23198870 15136745 )
plastid nucleoid (Pubmed: 23198870 15136745 )

TAIR curated location: mitochondrion & cytoplasm14671022,16169894
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G04130.3 11Arabidopsis thaliana052183900 (0)M
AT5G04130.2 11Arabidopsis thaliana052183902 (1)M
AT5G04130.1 11Arabidopsis thaliana0737869121 (18)M
Os01g16290.2 7Oryza sativa0549778918 (18)C
Os01g16290.1 7Oryza sativa0668778918 (18)C
Os02g47150.1 7Oryza sativa6E-2957725432 (2)_
GRMZM2G111014_P01 3.21Zea mays0703758576 (67)C
Zm00001eb128720_P002 agpv5Zea mays070375850 (0)C
Zm00001eb128720_P004 agpv5Zea mays070375850 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DNA_gyraseB(1) DNA_gyraseB_C(1) HATPase_c(1) HATPase_c_3(1) Toprim(1)
TargetP: Mitochondria (Class 3 C0.388; M0.853; S0.001; _0.003)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 730 aa (-cTP 667)
Molecular Weight 81.05 kDA(-cTP )
PI 8.63(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
542Detail       leaf [A. thaliana] stroma (FPLC) >500 kDa (HMB) wild-type
640Detail       leaf [A. thaliana] plastid nucleoid wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1638Detail       leaf [A. thaliana] total leaf tissue stromaWild-type
1643Detail       leaf [A. thaliana] total leaf tissue Wild-type
2289Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2299Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2303Detail        [A. thaliana] Clp C1 WT
2305Detail        [A. thaliana] Clp C1 TRAP
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 MitoDB(Mitochondrial proteome)
16326926(nucleoids)
19525416(leaf (wt and clpr4-1 mutant))
21311031(mitochondria)
21173025(root proteome)
21472856(mitochondrial-reference-proteome-Millar-Nov2011)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help