PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT3G10230.1 lycopene cyclase

Lab Annot.

lycopene beta cyclase (LYC)
Mapman: 16.1.4.5 secondary metabolism.isoprenoids.carotenoids.lycopene beta cyclase

Curated Location

plastid (Pubmed: 23198870 )

TAIR curated location: chloroplast8837512

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G10230.2 11 Arabidopsis thaliana 0 369 100 100 28 (11) _
AT5G57030.1 11 Arabidopsis thaliana 3E-87 421 37 57 41 (20) C
Os02g09750.1 7 Oryza sativa 0 459 72 83 28 (28) C
Os01g39960.1 7 Oryza sativa 7E-89 420 36 56 2 (2) C
Zm00001eb234930_P001 agpv5 Zea mays 0 444 74 85 0 (0) M
GRMZM5G849107_P01 3.21 Zea mays 0 444 74 85 87 (19) M
GRMZM5G849107_P02 3.21 Zea mays 0 444 74 85 87 (19) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DAO(2) FAD_binding_2(2) FAD_binding_3(1) FAD_oxidored(1) GIDA(2) HI0933_like(2)
TargetP:	Cytoplasm (Class 2 C0.091; M0.050; S0.075; _0.816)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	501 aa (-cTP 455)
Molecular Weight	56.18 kDA(-cTP )
PI	7.61(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1127	Detail								leaf [A. thaliana]	chloroplast plastoglobule	k2k3
1408	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
2290	Detail								[A. thaliana]		Clp C1 TRAP
2300	Detail								[A. thaliana]		Clp C1 TRAP
2306	Detail								[A. thaliana]		Clp C1 TRAP
2307	Detail								[A. thaliana]		Clp C1 TRAP
2320	Detail								[A. thaliana]	Thylakoids plastoglobule
2321	Detail								leaf [A. thaliana]
2324	Detail								leaf [A. thaliana]	THYLAKOIDS thylakoid membrane

* For details about the exprimental sources click here.

Published Proteomics Data

20061580(chloroplast envelope (inner+outer))
21693672(wound-regulated leaf proteome (wt))

Comparative Proteomics Data