PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G10220.1   tubulin folding cofactor B

Lab Annot. tubulin folding cofactor B
Mapman: 31.1 cell.organisation
Curated Location
TAIR curated location: nucleus & phragmoplast & cytoplasm15469496
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os04g59560.1 7Oryza sativa4E-11724365802 (2)C
v1_GRMZM2G127581_P02 4a53Zea mays4E-10823864820 (0)_
v1_GRMZM2G127581_P01 4a53Zea mays4E-10823864820 (0)_
GRMZM2G127581_P01 3.21Zea mays4E-10823864821 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: CAP_GLY(1) PB1(1) T6_Ig_like(1) Ubiquitin_2(1)
TargetP: Cytoplasm (Class 3 C0.151; M0.153; S0.074; _0.679)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 243 aa (-cTP 206)
Molecular Weight 27.33 kDA(-cTP )
PI 5.29(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1394Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2300Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

14617066(Nuclear proteome)
19546170(mature pollen grains)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help