PPDB

PPDB	The Plant Proteome Database

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AT3G09650.1 Tetratricopeptide repeat (TPR)-like superfamily protein

Lab Annot.

HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152)
Mapman: 27.1 RNA.processing

Curated Location

plastid nucleoid (Pubmed: 23198870 12782738 )

TAIR curated location: chloroplast stroma12782738

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G03100.1 11 Arabidopsis thaliana 9E-54 719 24 44 0 (0) M
AT1G69290.1 11 Arabidopsis thaliana 8E-43 686 24 42 0 (0) C
AT3G53700.1 11 Arabidopsis thaliana 3E-38 545 24 42 59 (51) C
Os12g01210.1 7 Oryza sativa 0 729 51 66 0 (0) C
Os11g01210.1 7 Oryza sativa 0 597 55 69 0 (0) M
Os10g28665.2 7 Oryza sativa 3E-44 700 23 46 0 (0) M
Zm00001eb156000_P001 agpv5 Zea mays 0 738 53 66 0 (0) M
GRMZM2G050697_P01 3.21 Zea mays 0 738 53 66 19 (18) M
v1_GRMZM2G050697_P01 4a53 Zea mays 0 738 53 66 10 (10) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Clathrin(2) DUF3368(3) PPR(12) PPR_1(9) PPR_2(9) PPR_3(8) PPR_long(6) TPR_MalT(2
TargetP:	Chloroplast (Class 2 C0.828; M0.148; S0.008; _0.065)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	778 aa (-cTP 713)
Molecular Weight	86.96 kDA(-cTP 80.08)
PI	6.58(-cTP 6.00)

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
361	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
528	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt2)
543	Detail								leaf [A. thaliana]	stroma (FPLC) >600 kDa (HMA)	wild-type
1347	Detail								leaf [A. thaliana]	total tissue (5 day HL)	wild-type (rep. 3)
1453	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1454	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 2)
1525	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
2320	Detail								[A. thaliana]	Thylakoids plastoglobule
2321	Detail								leaf [A. thaliana]
2324	Detail								leaf [A. thaliana]	THYLAKOIDS thylakoid membrane

* For details about the exprimental sources click here.

Published Proteomics Data

19995723(chloroplast reference proteome)

Comparative Proteomics Data