PPDB

 The Plant Proteome Database

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AT3G09650.1   Tetratricopeptide repeat (TPR)-like superfamily protein
Lab Annot. HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152)
Mapman: 27.1 RNA.processing
Curated Location plastid nucleoid (Pubmed: 23198870 12782738 )

TAIR curated location: chloroplast stroma12782738
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G03100.1 11Arabidopsis thaliana9E-5471924440 (0)M
AT1G69290.1 11Arabidopsis thaliana8E-4368624420 (0)C
AT3G53700.1 11Arabidopsis thaliana3E-38545244269 (41)C
Os12g01210.1 7Oryza sativa072951660 (0)C
Os11g01210.1 7Oryza sativa059755690 (0)M
Os10g28665.2 7Oryza sativa3E-4470023460 (0)M
Zm00001eb156000_P001 agpv5Zea mays073853660 (0)M
GRMZM2G050697_P01 3.21Zea mays0738536619 (18)M
v1_GRMZM2G050697_P01 4a53Zea mays0738536610 (10)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Clathrin(2) DUF3368(3) PPR(12) PPR_1(9) PPR_2(9) PPR_3(8) PPR_long(6) TPR_MalT(2
TargetP: Chloroplast (Class 2 C0.828; M0.148; S0.008; _0.065)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 778 aa (-cTP 713)
Molecular Weight 86.96 kDA(-cTP 80.08)
PI 6.58(-cTP 6.00)

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

 19995723(chloroplast reference proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help