PPDB

The Plant Proteome Database

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AT3G09540.1   Pectin lyase-like superfamily protein

Lab Annot. Pectin lyase-like superprotein
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G09540.2 11Arabidopsis thaliana028198990 (0)C
AT3G09540.3 11Arabidopsis thaliana037898980 (0)C
AT3G55140.1 11Arabidopsis thaliana2E-16532668800 (0)_
Os01g36620.1 7Oryza sativa1E-15334660750 (0)C
Os01g62000.1 7Oryza sativa2E-12929260750 (0)_
Os04g05050.2 7Oryza sativa9E-4628939510 (0)_
v1_GRMZM2G005562_P02 4a53Zea mays2E-15032465760 (0)C
GRMZM2G005562_P01 3.21Zea mays2E-15032465760 (0)C
Zm00001eb232710_P001 agpv5Zea mays2E-15032465760 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Beta_helix(1) Pectate_lyase_4(1)
TargetP: Chloroplast (Class 5 C0.471; M0.124; S0.009; _0.403)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 378 aa (-cTP 317)
Molecular Weight 41.47 kDA(-cTP 35.14)
PI 8.24(-cTP 8.46)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help