PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G09300.1   OSBP(oxysterol binding protein)-related protein 3B

Lab Annot.
Mapman: 31.4 cell.vesicle transport
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G02100.1 11Arabidopsis thaliana045788935 (4)C
AT5G02100.3 11Arabidopsis thaliana041990950 (0)_
AT5G59420.1 11Arabidopsis thaliana0446799042 (27)_
Os03g16690.1 7Oryza sativa0441768919 (19)C
Os03g49770.2 7Oryza sativa1E-5336936530 (0)_
Os03g49770.1 7Oryza sativa3E-5136936530 (0)C
Zm00001eb012300_P001 agpv5Zea mays042778900 (0)_
v1_GRMZM2G174644_P01 4a53Zea mays0427789011 (11)_
GRMZM2G174644_P01 3.21Zea mays0427789019 (12)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: EF-hand_4(1) Oxysterol_BP(1)
TargetP: Chloroplast (Class 5 C0.415; M0.130; S0.169; _0.341)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 458 aa (-cTP 428)
Molecular Weight 51.96 kDA(-cTP 49.15)
PI 5.06(-cTP 5.01)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
622Detail       leaf [A. thaliana] total leaf tissue wild-type
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help