PPDB

 The Plant Proteome Database

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AT3G09250.1   Nuclear transport factor 2 (NTF2) family protein
Lab Annot. UVR1 (UVR domain)
Mapman: 35.2 not assigned.unknown
Curated Location plastid stroma (Pubmed: 23198870 ) (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G09250.3 11Arabidopsis thaliana3E-1762301001000 (0)C
AT3G09250.2 11Arabidopsis thaliana5E-165219999944 (19)C
AT4G10925.2 11Arabidopsis thaliana2E-1211828520 (0)_
Os02g54710.1 7Oryza sativa4E-79184597827 (27)C
Os01g54960.1 7Oryza sativa7E-69182547515 (15)C
Os01g36940.1 7Oryza sativa1E-1212131510 (0)C
Zm00001eb257420_P003 agpv5Zea mays8E-6715957790 (0)C
Zm00001eb257420_P001 agpv5Zea mays1E-6615957790 (0)C
GRMZM2G128358_P01 3.21Zea mays1E-66159577944 (44)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: CaMKII_AD(1) DUF4440(1) SnoaL_3(1) UVR(1)
TargetP: Chloroplast (Class 3 C0.555; M0.050; S0.064; _0.151)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 244 aa (-cTP 176)
Molecular Weight 27.51 kDA(-cTP 20.05)
PI 5.92(-cTP 4.79)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
326Detail       leaf [A. thaliana] chloroplast stromawild-type
339Detail       leaf [A. thaliana] chloroplast stromawild-type
544Detail       leaf [A. thaliana] stroma (FPLC) <600 kDa (LMA) wild-type
873Detail       leaf [A. thaliana] chloroplast stromawild-type
874Detail       leaf [A. thaliana] chloroplast stromawild-type
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1455Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1688Detail        [A. thaliana] Col-0
1689Detail        [A. thaliana] Col-0
1690Detail        [A. thaliana]  
1691Detail        [A. thaliana] uvr
1692Detail        [A. thaliana] uvr
1943Detail       leaf [A. thaliana] stroma WT stromawild-type
1944Detail       leaf [A. thaliana] stroma UVR stromaUVR
1945Detail       leaf [A. thaliana] stroma UVR stromaUVR
1946Detail       leaf [A. thaliana] stroma UVR stromawild-type
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
19888209(leaves)

Comparative Proteomics Data

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