PPDB

The Plant Proteome Database

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AT3G08630.1   alphavirus core family protein (DUF3411)

Lab Annot. reticulate family member RER2
Mapman: 34 transport
Curated Location envelope-inner-integral
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G08640.1 11Arabidopsis thaliana0342838964 (63)C
AT2G37860.4 11Arabidopsis thaliana2E-2924831510 (0)C
AT2G37860.3 11Arabidopsis thaliana2E-29248315127 (25)C
Os01g59740.1 7Oryza sativa2E-105241667732 (32)C
Os01g72710.1 7Oryza sativa1E-2823930514 (4)C
Os04g44290.1 7Oryza sativa7E-2824931510 (0)C
v1_GRMZM2G460860_P01 4a53Zea mays6E-97234667854 (53)C
Zm00001eb150040_P001 agpv5Zea mays6E-9723466780 (0)C
GRMZM2G460860_P01 3.21Zea mays6E-97234667854 (54)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: RETICULATA-like(1)
TargetP: Chloroplast (Class 2 C0.918; M0.142; S0.009; _0.083)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 2 TMs
Aramemnon: 3 TMs
TAT position:
Length 339 aa (-cTP 281)
Molecular Weight 35.95 kDA(-cTP 29.62)
PI 8.52(-cTP 5.87)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

16618929(MITO/PLASTID-LOPIT-callus)
19995728(proplastid (Brassica napus))
19546170(mature pollen grains)
21173025(root proteome)
21515685(GreenCut2)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help