PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT3G07970.1 Pectin lyase-like superfamily protein

Lab Annot.

Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G57510.1 11 Arabidopsis thaliana 2E-135 435 46 65 0 (0) S
AT2G41850.1 11 Arabidopsis thaliana 5E-133 443 48 65 6 (6) S
AT1G80170.1 11 Arabidopsis thaliana 5E-110 376 45 62 2 (0) S
Os07g10680.1 7 Oryza sativa 3E-129 375 51 70 0 (0) S
Os07g10740.1 7 Oryza sativa 5E-128 387 48 66 0 (0) S
Os07g10700.1 7 Oryza sativa 1E-119 343 50 70 0 (0) S
Zm00001eb061780_P001 agpv5 Zea mays 2E-133 415 46 67 0 (0) S
GRMZM2G111609_P01 3.21 Zea mays 2E-133 415 46 67 0 (0) S
v1_GRMZM2G111609_P01 4a53 Zea mays 2E-133 415 46 67 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(1) Glyco_hydro_28(1) Pectate_lyase_3(3)
TargetP:	Secreted (Class 1 C0.040; M0.010; S0.957; _0.058)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:
TAT position:
Length	439 aa (-cTP 370)
Molecular Weight	48.57 kDA(-cTP )
PI	8.94(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data