PPDB

PPDB	The Plant Proteome Database

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AT3G07850.1 Pectin lyase-like superfamily protein

Lab Annot.

Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G14040.1 11 Arabidopsis thaliana 0 445 97 99 0 (0) S
AT5G48140.1 11 Arabidopsis thaliana 1E-123 364 49 67 0 (0) S
AT3G07840.1 11 Arabidopsis thaliana 2E-120 381 47 64 1 (1) S
Os08g23790.1 7 Oryza sativa 2E-97 389 41 57 0 (0) S
Os06g35320.1 7 Oryza sativa 8E-97 369 42 60 0 (0) S
Os06g35370.1 7 Oryza sativa 8E-97 369 42 60 0 (0) S
GRMZM2G153666_P02 3.21 Zea mays 6E-104 377 41 60 0 (0) S
Zm00001eb275910_P001 agpv5 Zea mays 6E-104 377 41 60 0 (0) S
v1_GRMZM2G153666_P02 4a53 Zea mays 6E-104 377 41 60 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(2) Glyco_hydro_28(1) NosD(2) Pectate_lyase_3(1)
TargetP:	Secreted (Class 1 C0.012; M0.023; S0.974; _0.049)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:
TAT position:
Length	444 aa (-cTP 371)
Molecular Weight	45.60 kDA(-cTP )
PI	8.63(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

16242667(mature Pollen)
16247729(mature Pollen)
18436743(specific to flower)
19546170(mature pollen grains)

Comparative Proteomics Data