PPDB

PPDB	The Plant Proteome Database

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AT3G07830.1 Pectin lyase-like superfamily protein

Lab Annot.

Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G07820.1 11 Arabidopsis thaliana 0 390 81 91 0 (0) S
AT3G07840.1 11 Arabidopsis thaliana 0 392 80 89 1 (1) S
AT5G48140.1 11 Arabidopsis thaliana 0 393 77 90 0 (0) S
Os06g35320.1 7 Oryza sativa 1E-102 369 41 60 0 (0) S
Os06g35370.1 7 Oryza sativa 1E-102 369 41 60 0 (0) S
Os02g10300.1 7 Oryza sativa 4E-95 354 40 60 0 (0) S
GRMZM2G030265_P01 3.21 Zea mays 2E-105 354 43 62 1 (1) S
v1_GRMZM2G030265_P01 4a53 Zea mays 2E-105 354 43 62 0 (0) S
GRMZM2G153666_P02 3.21 Zea mays 2E-105 360 43 64 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(3) DUF4135(1) Glyco_hydro_28(1) Pectate_lyase_3(2)
TargetP:	Secreted (Class 2 C0.093; M0.020; S0.737; _0.031)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	397 aa (-cTP 355)
Molecular Weight	42.91 kDA(-cTP )
PI	8.92(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

17526915(glycoproteome cell wall (stems))
19546170(mature pollen grains)
WallDB-E.Jamet(cell wall reference proteome)

Comparative Proteomics Data