PPDB

 The Plant Proteome Database

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AT3G07820.1   Pectin lyase-like superfamily protein
Lab Annot.
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G07830.1 11Arabidopsis thaliana039081910 (0)S
AT3G07840.1 11Arabidopsis thaliana038982911 (1)S
AT5G48140.1 11Arabidopsis thaliana038678900 (0)S
Os06g35320.1 7Oryza sativa4E-10135441620 (0)S
Os06g35370.1 7Oryza sativa4E-10135441620 (0)S
Os08g23790.1 7Oryza sativa6E-9835841640 (0)S
GRMZM2G153666_P02 3.21Zea mays5E-10736042650 (0)S
Zm00001eb275910_P001 agpv5Zea mays5E-10736042650 (0)S
v1_GRMZM2G153666_P02 4a53Zea mays5E-10736042650 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Beta_helix(3) DUF4135(1) Glyco_hydro_28(1) Pectate_lyase_3(2)
TargetP: Secreted (Class 1 C0.045; M0.008; S0.896; _0.051)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 391 aa (-cTP 343)
Molecular Weight 41.68 kDA(-cTP )
PI 7.03(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

 19546170(mature pollen grains)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help