PPDB

PPDB	The Plant Proteome Database

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AT3G07810.1 RNA-binding (RRM/RBD/RNP motifs) family protein

Lab Annot.

RNA-binding (RRM/RBD/RNP motifs) protein
Mapman: 27.4 RNA.RNA binding

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G07810.2 11 Arabidopsis thaliana 0 491 100 100 16 (3) _
AT5G47620.5 11 Arabidopsis thaliana 8E-122 496 47 61 0 (0) _
AT5G47620.1 11 Arabidopsis thaliana 8E-122 496 47 61 0 (0) _
Os11g41890.1 7 Oryza sativa 4E-157 488 55 70 10 (10) _
Os07g39560.2 7 Oryza sativa 2E-149 498 51 68 0 (0) _
Os07g39560.1 7 Oryza sativa 2E-149 498 51 68 0 (0) _
v1_GRMZM2G014400_P01 4a53 Zea mays 8E-148 500 51 67 3 (3) _
GRMZM2G014400_P01 3.21 Zea mays 8E-148 500 51 67 3 (3) _
Zm00001eb107930_P001 agpv5 Zea mays 8E-148 500 51 67 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Nup35_RRM_2(2) RRM_1(2) RRM_7(2)
TargetP:	Cytoplasm (Class 2 C0.089; M0.158; S0.034; _0.907)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	494 aa (-cTP 480)
Molecular Weight	51.87 kDA(-cTP )
PI	8.42(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2238	Detail								seedlings [A. thaliana]	total tissue	gfs9
2263	Detail								leaf [A. thaliana]	stroma Clp	Clp C1 trap
2306	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19376835(leaf phosphoproteins)
20706207(contaminants cell cycle interactome (cell culture))
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data