PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G07590.1   Small nuclear ribonucleoprotein family protein
Lab Annot. small nuclear ribonucleoprotein D1, putative / snRNP core protein D1
Mapman: 27.1 RNA.processing
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G07590.2 11Arabidopsis thaliana1E-7611410010025 (19)_
AT4G02840.1 11Arabidopsis thaliana2E-6096929757 (28)_
AT4G02840.2 11Arabidopsis thaliana4E-57106838827 (21)_
Os04g39444.1 7Oryza sativa1E-5998909618 (18)_
Os02g37430.1 7Oryza sativa1E-5898889425 (25)_
Os02g01250.1 7Oryza sativa1E-079827488 (8)_
Zm00001eb183380_P001 agpv5Zea mays2E-609789980 (0)_
v1_GRMZM2G416061_P04 4a53Zea mays2E-5998899768 (67)_
v1_GRMZM2G416061_P02 4a53Zea mays2E-5998899768 (67)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF2642(2) Gemin7(1) LSM(1)
TargetP: Cytoplasm (Class 4 C0.049; M0.113; S0.263; _0.645)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 114 aa (-cTP 70)
Molecular Weight 12.60 kDA(-cTP )
PI 11.23(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
1618Detail        [A. thaliana] m48
1622Detail        [A. thaliana] m48
2021Detail       leaf [A. thaliana] total leaf tissue  
2182Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2254Detail       leaf [A. thaliana] total seedlings gfs9
2255Detail       leaf [A. thaliana] total seedlings gfs9
2256Detail       leaf [A. thaliana] total seedlings gfs9
2257Detail       leaf [A. thaliana] total seedlings gfs9
2259Detail       leaf [A. thaliana] total seedlings gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

 17151019(vacuole - suspension cell)
19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help