PPDB

The Plant Proteome Database

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AT3G07170.1   Sterile alpha motif (SAM) domain-containing protein

Lab Annot. Sterile alpha motif (SAM) domain-containing protein
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G07170.2 11Arabidopsis thaliana5E-1181651001000 (0)_
AT5G48680.1 11Arabidopsis thaliana2E-8220766760 (0)_
AT1G70180.2 11Arabidopsis thaliana2E-155761730 (0)M
Os04g30910.2 7Oryza sativa7E-5421748640 (0)_
Os04g30910.1 7Oryza sativa5E-4620447620 (0)_
Os04g30910.3 7Oryza sativa2E-3111554660 (0)C
Zm00001eb085860_P004 agpv5Zea mays7E-5321650640 (0)_
Zm00001eb085860_P001 agpv5Zea mays7E-5321650640 (0)_
v1_GRMZM2G082207_P01 4a53Zea mays7E-53216506418 (18)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF5491(1) Glyco_transf_88(1) IGR(2) SAM_1(1) SAM_2(1)
TargetP: Cytoplasm (Class 2 C0.146; M0.137; S0.021; _0.921)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 203 aa (-cTP 107)
Molecular Weight 22.68 kDA(-cTP )
PI 9.66(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help