PPDB

 The Plant Proteome Database

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AT3G07030.1   Alba DNA/RNA-binding protein
Lab Annot. Alba DNA/RNA-binding protein
Mapman: 28 DNA
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links PeptideAtlas   POGS   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G07030.5 11Arabidopsis thaliana3E-14226684840 (0)_
AT1G76010.1 11Arabidopsis thaliana2E-53135617671 (60)_
AT1G76010.2 11Arabidopsis thaliana2E-5313561760 (0)_
Os03g06980.1 7Oryza sativa3E-67136758813 (13)_
Os03g52490.1 7Oryza sativa5E-63128728921 (21)_
Os09g37006.2 7Oryza sativa9E-53135617918 (18)_
Zm00001eb403460_P003 agpv5Zea mays6E-6513274870 (0)_
GRMZM2G075505_P01 3.21Zea mays2E-6413274877 (7)_
Zm00001eb403460_P002 agpv5Zea mays2E-6413274870 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Alba(1) Rpp20(2)
TargetP: Cytoplasm (Class 3 C0.039; M0.334; S0.029; _0.803)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 405 aa (-cTP 399)
Molecular Weight 42.50 kDA(-cTP )
PI 9.15(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
2239Detail       seedlings [A. thaliana] total tissue gfs9
2241Detail       seedlings [A. thaliana] total tissue gfs9
2254Detail       leaf [A. thaliana] total seedlings gfs9
2255Detail       leaf [A. thaliana] total seedlings gfs9
2256Detail       leaf [A. thaliana] total seedlings gfs9
2257Detail       leaf [A. thaliana] total seedlings gfs9
2258Detail       leaf [A. thaliana] total seedlings gfs9
2259Detail       leaf [A. thaliana] total seedlings gfs9
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

 21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help