PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G06960.1   pigment defective 320
Lab Annot. TGD4 (involved in ER-to-plastid lipid transport)
Mapman: 11.15* lipid metabolism.transport
Curated Location envelope-outer (Pubmed: 23198870 18689504 22269056 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G06960.2 11Arabidopsis thaliana030499990 (0)_
AT2G44640.1 11Arabidopsis thaliana3E-704813551100 (98)C
Os01g14820.1 7Oryza sativa2E-14848348630 (0)_
Zm00001eb127450_P001 agpv5Zea mays6E-15148048630 (0)_
EF517601.1_FGP015 3.21Zea mays7E-13547745592 (2)_
v1_EF517601.1_FGP015 4a53Zea mays7E-13547745590 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF3769(3)
TargetP: Cytoplasm (Class 2 C0.108; M0.109; S0.022; _0.862)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 479 aa (-cTP 435)
Molecular Weight 52.82 kDA(-cTP )
PI 6.36(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
342Detail       leaf [A. thaliana] chloroplast low density membranewild-type
877Detail       leaf [A. thaliana] chloroplast stromawild-type

* For details about the exprimental sources click here.

Published Proteomics Data

 16618929(UNKNOWN-LOPIT-callus)
18431481(chloroplast)
20061580(chloroplast envelope (inner+outer))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help