PPDB

 The Plant Proteome Database

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AT3G06810.1   acyl-CoA dehydrogenase-like protein
Lab Annot. IBR3 (IBA-RESPONSE 3); acyl-CoA dehydrogenase/ oxidoreductase
Mapman: 11.9.4.2 lipid metabolism.lipid degradation.beta-oxidation.acyl CoA DH
Curated Location peroxisome (Pubmed: 19329564 17277896 21472859 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G45300.1 11Arabidopsis thaliana5E-17288254143 (33)M
Os07g47820.1 7Oryza sativa0828698012 (12)_
Os07g47820.2 7Oryza sativa061063752 (2)_
Os05g03480.5 7Oryza sativa3E-2128827430 (0)_
Zm00001eb111400_P002 agpv5Zea mays080969800 (0)S
v1_GRMZM2G001297_P01 4a53Zea mays0809698017 (17)S
GRMZM2G001297_P01 3.21Zea mays0816688053 (11)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Acyl-CoA_dh_1(1) Acyl-CoA_dh_2(1) Acyl-CoA_dh_M(1) Acyl-CoA_dh_N(1) APH(1) Choli
TargetP: Cytoplasm (Class 4 C0.102; M0.294; S0.011; _0.656)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 824 aa (-cTP 766)
Molecular Weight 91.71 kDA(-cTP )
PI 8.56(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1113Detail        [A. thaliana] control for RARE-1 co-IP wild-type
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1612Detail       Natural Senescence leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1636Detail       leaf [A. thaliana] Stroma stromaclpt1-2
1637Detail       leaf [A. thaliana] total leaf tissue stromaWild-type
1748Detail       leaf [A. thaliana] total leaf tissue Col_0
1757Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1758Detail       leaf [A. thaliana] total leaf tissue DXS_Flag+fosmidomycin
1930Detail       leaf [A. thaliana] total leaf tissue Col_0 Wild-type
1932Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2221Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep
2222Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep
2238Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2268Detail       seedlings [A. thaliana] total tissue wild-type
2269Detail       seedlings [A. thaliana] total tissue wild-type
2271Detail       seedlings [A. thaliana] total tissue wild-type
2289Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2297Detail        [A. thaliana] Clp C1 WT
2298Detail        [A. thaliana] Clp C1 WT
2304Detail        [A. thaliana] Clp C1 WT
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 18463617(suspension cells-phosphorylated proteins)
18931141(peroxisomes- high&low purity (cell culture))
18931141(peroxisomes-high purity (cell culture))
19200160(flower-stage 12)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
19329564(peroxisomes (leaf))
19114538(guard cells Arabidopsis leaf)
22010978(Endosomal-sorting-interactome-VPS2.2)
21166475(cytosolic-fractions-crude)
21173025(root proteome)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help