PPDB

PPDB	The Plant Proteome Database

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AT3G06770.2 Pectin lyase-like superfamily protein

Lab Annot.

Pectin lyase-like
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G06770.5 11 Arabidopsis thaliana 0 444 100 100 0 (0) S
AT3G06770.1 11 Arabidopsis thaliana 0 377 100 100 11 (0) _
AT3G06770.3 11 Arabidopsis thaliana 0 377 100 100 11 (0) _
Os11g43750.1 7 Oryza sativa 2E-171 403 58 76 0 (0) M
Os12g36810.1 7 Oryza sativa 5E-157 395 55 76 0 (0) S
Os03g61800.1 7 Oryza sativa 2E-151 437 52 69 0 (0) S
v1_GRMZM2G139828_P01 4a53 Zea mays 1E-168 398 57 77 0 (0) M
Zm00001eb165490_P001 agpv5 Zea mays 1E-168 398 57 77 0 (0) M
GRMZM2G139828_P01 3.21 Zea mays 1E-168 398 57 77 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(3) Glyco_hydro_28(1) Pectate_lyase_3(2) Pectate_lyase_4(3)
TargetP:	Secreted (Class 2 C0.073; M0.067; S0.817; _0.090)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	446 aa (-cTP 386)
Molecular Weight	48.12 kDA(-cTP )
PI	6.23(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
621	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1

* For details about the exprimental sources click here.

Published Proteomics Data

18796151(cell wall (hypocotyl))
WallDB-E.Jamet(cell wall reference proteome)
22060019(phosphoproteome - N-starved seedlings)
21109274(cellwall-glycoproteome)

Comparative Proteomics Data