PPDB

PPDB	The Plant Proteome Database

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AT3G06770.1 Pectin lyase-like superfamily protein

Lab Annot.

Pectin lyase-like
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G06770.2 11 Arabidopsis thaliana 0 377 100 100 14 (1) S
AT3G06770.5 11 Arabidopsis thaliana 0 377 100 100 0 (0) S
AT3G06770.3 11 Arabidopsis thaliana 0 377 100 100 11 (0) _
Os11g43750.1 7 Oryza sativa 9E-150 365 56 75 0 (0) M
Os12g36810.1 7 Oryza sativa 7E-140 365 54 75 0 (0) S
Os07g14160.1 7 Oryza sativa 5E-131 365 52 70 0 (0) S
GRMZM2G113815_P01 3.21 Zea mays 3E-150 367 55 74 0 (0) S
Zm00001eb410050_P001 agpv5 Zea mays 3E-150 367 55 74 0 (0) S
v1_GRMZM2G113815_P01 4a53 Zea mays 3E-150 367 55 74 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(3) Glyco_hydro_28(1) Pectate_lyase_4(2)
TargetP:	Cytoplasm (Class 4 C0.073; M0.315; S0.142; _0.574)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	377 aa (-cTP 337)
Molecular Weight	40.81 kDA(-cTP )
PI	6.04(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

18796151(cell wall (hypocotyl))
WallDB-E.Jamet(cell wall reference proteome)
22060019(phosphoproteome - N-starved seedlings)
21109274(cellwall-glycoproteome)

Comparative Proteomics Data