PPDB

The Plant Proteome Database

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AT3G06530.3   ARM repeat superfamily protein

Lab Annot. unknown protein - BP28CT (NUC211) domain
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links PeptideAtlas   POGS   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G06530.2 11Arabidopsis thaliana02199999917 (13)S
AT3G06530.4 11Arabidopsis thaliana0221098980 (0)S
AT3G06530.1 11Arabidopsis thaliana02199999921 (17)S
Os04g46310.1 7Oryza sativa01573375613 (13)C
Os04g46310.2 7Oryza sativa6E-17358650680 (0)_
Zm00001eb123540_P001 agpv5Zea mays0225238580 (0)C
v1_GRMZM2G134385_P01 4a53Zea mays0773426412 (12)_
GRMZM2G134385_P01 3.21Zea mays077342645 (5)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: BP28CT(2) CEP209_CC5(2) HEAT(3) U3snoRNP10(3)
TargetP: Secreted (Class 5 C0.426; M0.088; S0.434; _0.176)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 2188 aa (-cTP 2171)
Molecular Weight 245.17 kDA(-cTP )
PI 6.82(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1455Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1483Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 2)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
2013Detail       leaf [A. thaliana] total leaf tissue wt
2249Detail       seedlings [A. thaliana] total tissue gfs9
2600Detail       rosettes [A. thaliana] total leaf tissue fmtclpc1
2601Detail       Rosettes [A. thaliana] total leaf tissue fmtclpc1
2603Detail       Rosettes [A. thaliana] total leaf tissue clpc1
2604Detail       Rosettes [A. thaliana] Total leaf tissue clpc1

* For details about the exprimental sources click here.

Published Proteomics Data

21166475(cytosolic-fractions-crude)
21433285(Crude microsomes cell_cultures)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help