PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G06530.1   ARM repeat superfamily protein
Lab Annot. unknown protein - BP28CT (NUC211) domain
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G06530.5 11Arabidopsis thaliana0220899990 (0)S
AT3G06530.4 11Arabidopsis thaliana0221099990 (0)S
AT3G06530.3 11Arabidopsis thaliana02199999917 (9)S
Os04g46310.1 7Oryza sativa01579375613 (13)C
Os04g46310.2 7Oryza sativa8E-17358650680 (0)_
Zm00001eb123540_P001 agpv5Zea mays0155038580 (0)C
v1_GRMZM2G134385_P01 4a53Zea mays0773426412 (12)_
GRMZM2G134385_P01 3.21Zea mays077342645 (5)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: BP28CT(2) CEP209_CC5(2) HEAT(3) U3snoRNP10(2)
TargetP: Secreted (Class 5 C0.426; M0.088; S0.434; _0.176)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 2197 aa (-cTP 2180)
Molecular Weight 246.32 kDA(-cTP )
PI 6.63(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
326Detail       leaf [A. thaliana] chloroplast stromawild-type
339Detail       leaf [A. thaliana] chloroplast stromawild-type
873Detail       leaf [A. thaliana] chloroplast stromawild-type
874Detail       leaf [A. thaliana] chloroplast stromawild-type
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1455Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1483Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 2)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
2013Detail       leaf [A. thaliana] total leaf tissue wt
2249Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

 15539469(vacuole)
18431481(chloroplast)
19452453(14-3-3-interacting proteins)
19334764(plasma membrane (cell culture))
21166475(cytosolic-fractions-crude)
21433285(Crude microsomes cell_cultures)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help