PPDB

PPDB	The Plant Proteome Database

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AT3G06480.1 DEAD box RNA helicase family protein

Lab Annot.

DEAD box RNA helicase (RH40)
Mapman: 27.5* RNA.DEAD/DEAH BOX helicase

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G06480.2 11 Arabidopsis thaliana 0 752 99 99 0 (0) _
AT3G01540.2 11 Arabidopsis thaliana 0 452 72 83 64 (45) _
AT3G01540.4 11 Arabidopsis thaliana 0 452 72 83 64 (45) _
Os11g46240.1 7 Oryza sativa 0 544 64 77 17 (17) _
Os01g07740.3 7 Oryza sativa 0 399 74 87 0 (0) _
Os01g36860.1 7 Oryza sativa 0 442 69 82 25 (25) _
Zm00001eb164820_P002 agpv5 Zea mays 0 456 72 85 0 (0) _
Zm00001eb164820_P004 agpv5 Zea mays 0 456 72 85 0 (0) _
Zm00001eb164820_P003 agpv5 Zea mays 0 456 72 85 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DEAD(2) ERCC3_RAD25_C(1) Helicase_C(2) ResIII(1) WW(1)
TargetP:	Cytoplasm (Class 2 C0.175; M0.069; S0.049; _0.927)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1088 aa (-cTP 997)
Molecular Weight	119.56 kDA(-cTP )
PI	9.95(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2325	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane	abc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

15539469(vacuole)
18463617(suspension cells-phosphorylated proteins)
21173025(root proteome)
20813957(SUMO proteome)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data