PPDB

 The Plant Proteome Database

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AT3G06430.1   Tetratricopeptide repeat (TPR)-like superfamily protein
Lab Annot. PPR2- PPR protein - interacts with 23S RNA
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein
Curated Location plastid (Pubmed: 23198870 21435048 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G53170.4 11Arabidopsis thaliana4E-11039640630 (0)_
AT3G53170.1 11Arabidopsis thaliana1E-10946236590 (0)C
AT3G53170.2 11Arabidopsis thaliana1E-10946236590 (0)C
Os03g19650.3 7Oryza sativa0426688213 (13)C
Os03g19650.1 7Oryza sativa0426688213 (13)C
Os03g19650.2 7Oryza sativa0426688213 (13)C
Zm00001eb298940_P002 agpv5Zea mays043464800 (0)C
Zm00001eb298940_P001 agpv5Zea mays043464800 (0)C
GRMZM2G341621_P01 3.21Zea mays04346480115 (97)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: ATP13(3) Clathrin(4) Mtf2(3) PPR(11) PPR_1(10) PPR_2(9) PPR_3(8) PPR_long(4) RPM
TargetP: Chloroplast (Class 1 C0.926; M0.070; S0.036; _0.059)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 486 aa (-cTP 450)
Molecular Weight 55.70 kDA(-cTP 51.65)
PI 7.89(-cTP 5.73)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1179Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2300Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data

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