PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT3G06430.1 Tetratricopeptide repeat (TPR)-like superfamily protein

Lab Annot.

PPR2- PPR protein - interacts with 23S RNA
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein

Curated Location

plastid (Pubmed: 23198870 21435048 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G53170.4 11 Arabidopsis thaliana 4E-110 396 40 63 0 (0) _
AT3G53170.1 11 Arabidopsis thaliana 1E-109 462 36 59 0 (0) C
AT3G53170.2 11 Arabidopsis thaliana 1E-109 462 36 59 0 (0) C
Os03g19650.3 7 Oryza sativa 0 426 68 82 13 (13) C
Os03g19650.1 7 Oryza sativa 0 426 68 82 13 (13) C
Os03g19650.2 7 Oryza sativa 0 426 68 82 13 (13) C
Zm00001eb298940_P002 agpv5 Zea mays 0 434 64 80 0 (0) C
Zm00001eb298940_P001 agpv5 Zea mays 0 434 64 80 0 (0) C
GRMZM2G341621_P01 3.21 Zea mays 0 434 64 80 100 (97) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ATP13(3) Clathrin(4) Mtf2(3) PPR(11) PPR_1(10) PPR_2(9) PPR_3(8) PPR_long(4) RPM
TargetP:	Chloroplast (Class 1 C0.926; M0.070; S0.036; _0.059)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	486 aa (-cTP 450)
Molecular Weight	55.70 kDA(-cTP 51.65)
PI	7.89(-cTP 5.73)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1178	Detail								leaf [A. thaliana]	co-IP RH3 stroma	clpr2-1
1179	Detail								leaf [A. thaliana]	co-IP ClpR2 stroma	clpr2-1
1399	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1401	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1407	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1408	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1453	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1482	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 1)
1525	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
2016	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2300	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data