PPDB

 The Plant Proteome Database

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AT3G06400.1   chromatin-remodeling protein 11
Lab Annot. chromatin-remodeling protein 11
Mapman: 27.3.44 RNA.regulation of transcription.Chromatin Remodeling Factors
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G06400.2 11Arabidopsis thaliana01056999911 (11)_
AT3G06400.3 11Arabidopsis thaliana01057999911 (11)_
AT5G18620.2 11Arabidopsis thaliana0106391953 (3)_
Os01g27040.1 7Oryza sativa0100885934 (4)_
ChrUn.fgenesh.mRNA.85 7Oryza sativa0102284910 (0) 
Os05g05780.1 7Oryza sativa0102383910 (0)_
AC235535.1_FGP001 3.21Zea mays093485925 (5)_
v1_AC235535.1_FGP001 4a53Zea mays0934859221 (21)_
Zm00001eb341650_P001 agpv5Zea mays088984910 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: AAA_14(1) DBINO(2) DEAD(1) DUF1086(1) DUF1509(1) HAND(1) HDA2-3(1) Helicase_C(1)
TargetP: Cytoplasm (Class 2 C0.177; M0.103; S0.150; _0.869)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 1055 aa (-cTP 1034)
Molecular Weight 122.43 kDA(-cTP )
PI 5.69(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1423Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1424Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 1)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1444Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1535Detail       leaf [A. thaliana] wild-type
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 18463617(suspension cells-phosphorylated proteins)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20733066(phosphoproteome-ABA-leaf)
20813957(SUMO proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help