PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G05800.1   AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1
Lab Annot.
Mapman: 27.3.6 RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G09250.1 11Arabidopsis thaliana2E-3116445630 (0)C
AT3G06590.2 11Arabidopsis thaliana9E-2817037520 (0)C
AT3G06590.3 11Arabidopsis thaliana9E-2817037520 (0)C
Os03g19780.1 7Oryza sativa8E-2715044570 (0)_
Os01g14110.1 7Oryza sativa1E-1716436480 (0)M
Os07g48900.1 7Oryza sativa3E-1713845530 (0)C
v1_GRMZM2G078267_P01 4a53Zea mays5E-2114940510 (0)C
GRMZM2G078267_P01 3.21Zea mays5E-2114940510 (0)C
Zm00001eb336960_P001 agpv5Zea mays5E-2114940510 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF471(1)
TargetP: Chloroplast (Class 3 C0.938; M0.028; S0.008; _0.484)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 211 aa (-cTP 166) (-lTP 78)
Molecular Weight 23.18 kDA(-cTP 18.16)(-lTP 8.16)
PI 11.82(-cTP 11.85)(-lTP 10.745)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help