PPDB

The Plant Proteome Database

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AT3G05680.1   embryo defective 2016

Lab Annot. unknown protein (EMB2016)
Mapman: 33.99 development.unspecified
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G05680.2 11Arabidopsis thaliana021381001002 (2)_
Os03g35340.1 7Oryza sativa0183537538 (8)_
Zm00001eb220020_P003 agpv5Zea mays0227641580 (0)_
Zm00001eb220020_P001 agpv5Zea mays0226840570 (0)_
Zm00001eb220020_P002 agpv5Zea mays0226840570 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: VIR_N(2)
TargetP: Cytoplasm (Class 4 C0.053; M0.068; S0.210; _0.579)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon: 3 TMs
TAT position:
Length 2138 aa (-cTP 2069)
Molecular Weight 234.22 kDA(-cTP )
PI 5.39(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help