PPDB

The Plant Proteome Database

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AT3G05500.1   Rubber elongation factor protein (REF)

Lab Annot.
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G05500.2 11Arabidopsis thaliana2E-110158991000 (0)S
AT2G47780.1 11Arabidopsis thaliana4E-5722241632 (2)_
AT1G67360.2 11Arabidopsis thaliana2E-332163748136 (136)S
Os07g47510.1 7Oryza sativa2E-76226527121 (21)_
Os05g05940.1 7Oryza sativa7E-6521151714 (4)_
Os07g47510.2 7Oryza sativa5E-298656800 (0)_
Zm00001eb354140_P001 agpv5Zea mays2E-6320952710 (0)_
Zm00001eb354140_P003 agpv5Zea mays3E-6320952710 (0)_
GRMZM2G150367_P01 3.21Zea mays3E-6320952714 (4)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: REF(1)
TargetP: Cytoplasm (Class 2 C0.111; M0.271; S0.057; _0.872)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 246 aa (-cTP 235)
Molecular Weight 27.19 kDA(-cTP )
PI 8.31(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1125Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1126Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1127Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3

* For details about the exprimental sources click here.

Published Proteomics Data

15539469(vacuole)
16247729(mature Pollen)
19546170(mature pollen grains)
19334764(plasma membrane (cell culture))
21173025(root proteome)
21988472(vacuole (unfiltered data))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help