PPDB

The Plant Proteome Database

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AT3G05280.1   Integral membrane Yip1 family protein

Lab Annot. Integral membrane Yip1 protein
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G27490.1 11Arabidopsis thaliana028190950 (0)_
AT2G39805.1 11Arabidopsis thaliana8E-5528236550 (0)_
AT2G39805.2 11Arabidopsis thaliana3E-5428236540 (0)_
Os01g42480.1 7Oryza sativa2E-137292687912 (12)_
Os01g42480.2 7Oryza sativa2E-105223677712 (12)_
Os05g38180.1 7Oryza sativa2E-5128036530 (0)_
Zm00001eb161830_P001 agpv5Zea mays1E-13729169800 (0)_
GRMZM2G020140_P01 3.21Zea mays1E-13729169808 (7)_
v1_GRMZM2G020140_P01 4a53Zea mays1E-13729169805 (5)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: 7tm_6(1) YIF1(1) Yip1(1)
TargetP: Cytoplasm (Class 4 C0.366; M0.103; S0.075; _0.712)
Predotar:
Subcel. Location:
TM-HMM prediction: 5 TMs
Aramemnon: 5 TMs
TAT position:
Length 281 aa (-cTP 265)
Molecular Weight 30.75 kDA(-cTP )
PI 6.95(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2268Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
19546170(mature pollen grains)
19334764(plasma membrane (cell culture))
19114538(guard cells Arabidopsis leaf)
21826108(SYP trans-Golgi-filtered)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
22430844(Golgi-cell-culture)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help