PPDB

PPDB	The Plant Proteome Database

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AT3G05250.1 RING/U-box superfamily protein

Lab Annot.

RING/U-box protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G05250.3 11 Arabidopsis thaliana 5E-154 208 99 100 0 (0) _
AT3G05250.2 11 Arabidopsis thaliana 5E-154 208 99 100 0 (0) _
AT2G39100.1 11 Arabidopsis thaliana 7E-08 273 20 39 0 (0) C
Os03g59540.1 7 Oryza sativa 4E-64 264 41 64 0 (0) _
Zm00001eb212380_P001 agpv5 Zea mays 4E-67 265 43 64 0 (0) C
AC210013.4_FGP009 3.21 Zea mays 1E-62 276 41 61 0 (0) C
v1_AC210013.4_FGP009 4a53 Zea mays 1E-62 276 41 61 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF1244(1) FYVE(1) Prok-RING_4(2) zf-ANAPC11(1) zf-C3HC4(1) zf-C3HC4_2(1) zf-C3H
TargetP:	Cytoplasm (Class 2 C0.218; M0.078; S0.064; _0.845)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	278 aa (-cTP 224)
Molecular Weight	32.22 kDA(-cTP )
PI	5.34(-cTP )

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1125	Detail								leaf [A. thaliana]	chloroplast plastoglobule	k2k3

* For details about the exprimental sources click here.

Published Proteomics Data

21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data