PPDB

PPDB	The Plant Proteome Database

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AT3G05200.1 RING/U-box superfamily protein

Lab Annot.

ATL6 (Arabidopsis T?xicos en Levadura 6); protein binding / zinc ion binding
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

plasma membrane

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G27420.1 11 Arabidopsis thaliana 6E-164 374 66 75 0 (0) S
AT1G72200.1 11 Arabidopsis thaliana 2E-56 367 36 52 0 (0) _
AT4G40070.1 11 Arabidopsis thaliana 4E-54 275 40 55 0 (0) M
Os09g29310.1 7 Oryza sativa 1E-57 304 41 50 0 (0) S
Os08g37760.1 7 Oryza sativa 1E-51 367 37 47 0 (0) M
Os02g52210.2 7 Oryza sativa 9E-41 277 35 48 0 (0) M
GRMZM2G082653_P01 3.21 Zea mays 9E-65 354 41 53 1 (1) _
Zm00001eb315600_P001 agpv5 Zea mays 9E-65 354 41 53 0 (0) _
v1_GRMZM2G082653_P01 4a53 Zea mays 9E-65 354 41 53 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Baculo_RING(1) FANCL_C(1) PHD(1) Prok-RING_1(2) Prok-RING_4(1) RINGv(1) zf-ANAPC
TargetP:	Secreted (Class 2 C0.006; M0.009; S0.891; _0.127)
Predotar:
Subcel. Location:
TM-HMM prediction:	2 TMs
Aramemnon:	1 TMs
TAT position:
Length	398 aa (-cTP 351)
Molecular Weight	43.27 kDA(-cTP )
PI	9.05(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1494	Detail								leaf [A. thaliana]

* For details about the exprimental sources click here.

Published Proteomics Data

14506206(Plasma Membrane proteome)
14506206(plasma membrane (phosphorylated))
15308754(plasma membrane (phosphorylated))
17317660(Plasma Membrane proteome)
18463617(suspension cells-phosphorylated proteins)
19253305(phosphoproteins (etiolated seedling))
19376835(leaf phosphoproteins)
21826108(SYP trans-Golgi-filtered)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data