PPDB

 The Plant Proteome Database

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AT3G05180.1   GDSL-like Lipase/Acylhydrolase superfamily protein
Lab Annot. GDSL-motif lipase/hydrolase protein
Mapman: 26.28 misc.GDSL-motif lipase
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G54790.3 11Arabidopsis thaliana5E-15636559740 (0)S
AT1G54790.1 11Arabidopsis thaliana7E-15636758740 (0)S
AT1G54790.2 11Arabidopsis thaliana7E-15039354690 (0)S
Os05g33270.1 7Oryza sativa5E-14234157732 (2)S
Os01g22660.1 7Oryza sativa2E-8833844583 (3)M
Os07g39750.1 7Oryza sativa4E-8635142585 (5)S
AC212068.4_FGP005 3.21Zea mays1E-13934156730 (0)S
Zm00001eb287590_P002 agpv5Zea mays1E-13934156730 (0)S
v1_GRMZM2G022050_P02 4a53Zea mays1E-139341567314 (14)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Lipase_GDSL(1)
TargetP: Secreted (Class 1 C0.005; M0.072; S0.963; _0.024)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 379 aa (-cTP 293)
Molecular Weight 42.34 kDA(-cTP )
PI 6.50(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1208Detail       leaf [A. thaliana] total leaf tissue clpp3 null
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 18538804(apoplast)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help