PPDB

PPDB	The Plant Proteome Database

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AT3G05060.1 NOP56-like pre RNA processing ribonucleoprotein

Lab Annot.

SAR DNA-binding protein, putative
Mapman: 27.3.67 RNA.regulation of transcription.putative transcription regulator

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G27140.1 11 Arabidopsis thaliana 0 504 59 70 0 (0) S
AT5G27140.2 11 Arabidopsis thaliana 0 502 59 70 0 (0) S
AT5G27120.1 11 Arabidopsis thaliana 0 451 88 94 23 (15) _
Os03g22730.1 7 Oryza sativa 0 471 77 89 18 (18) _
Os03g22740.1 7 Oryza sativa 0 488 75 87 18 (18) _
Os03g22880.1 7 Oryza sativa 1E-113 413 46 65 18 (18) _
GRMZM2G124576_P01 3.21 Zea mays 0 435 78 89 74 (35) _
v1_GRMZM2G124576_P01 4a53 Zea mays 0 435 78 89 45 (45) _
GRMZM2G124576_P02 3.21 Zea mays 0 467 76 87 84 (45) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	FCP1_C(1) Nop(1) NOP5NT(1) RR_TM4-6(1) SID-1_RNA_chan(1)
TargetP:	Cytoplasm (Class 5 C0.150; M0.042; S0.376; _0.471)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	533 aa (-cTP 515)
Molecular Weight	59.00 kDA(-cTP )
PI	9.24(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1395	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1405	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	wild-type
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1422	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 2)
1425	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 2)
1426	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 3)
1529	Detail								leaf [A. thaliana]	total leaf tissue - 0 uM CAP	wild-type (rep. 1)
1530	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	wild-type (rep. 1)
1532	Detail								leaf [A. thaliana]	total leaf tissue - 0 uM CAP	clps (rep. 1)
1533	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	clps (rep. 1)
1534	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	clps (rep. 1)
1545	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt
1557	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt
1576	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	K2K3
1577	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	WT
1611	Detail								leaf [A. thaliana]	chloroplast fractionation thylakoid membrane
1697	Detail								Rosettes [A. thaliana]	Thylakoids thylakoid membrane	k1k3
1714	Detail								Rosettes [A. thaliana]	Thylakoids thylakoid membrane	k1k3
1716	Detail								Rosettes [A. thaliana]	Thylakoids thylakoid membrane	k5-1
1828	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Col-0 Fluctuating light
2239	Detail								seedlings [A. thaliana]	total tissue	gfs9
2240	Detail								seedlings [A. thaliana]	total tissue	gfs9
2241	Detail								seedlings [A. thaliana]	total tissue	gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

15496452(nucleolus)
17432890(leaf total membranes)
19200160(flower-stage 12)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
19714877(interactomes 14-3-3 complexes (cell culture))
20166762(guard cells (Arabidopsis))
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data