PPDB

 The Plant Proteome Database

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AT3G04940.1   cysteine synthase D1
Lab Annot. cysteine synthase, O-acetylserine (thiol)-lyase
Mapman: 13.1.5.3.1 amino acid metabolism.synthesis.serine-glycine-cysteine group.cysteine.OASTL
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G04940.2 11Arabidopsis thaliana03241001000 (0)_
AT5G28020.1 11Arabidopsis thaliana1E-170322778975 (23)_
AT5G28020.2 11Arabidopsis thaliana1E-170322778975 (23)_
Os01g74650.3 7Oryza sativa4E-154315708578 (78)C
Os01g74650.2 7Oryza sativa4E-153316708543 (43)C
Os03g53650.3 7Oryza sativa3E-151321698537 (37)_
GRMZM2G082185_P01 3.21Zea mays9E-1533157186242 (162)C
Zm00001eb333980_P001 agpv5Zea mays9E-153315718612 (12)C
v1_GRMZM2G082185_P01 4a53Zea mays9E-1533157186149 (148)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: PALP(1)
TargetP: Cytoplasm (Class 1 C0.090; M0.082; S0.068; _0.925)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 324 aa (-cTP 292)
Molecular Weight 34.29 kDA(-cTP )
PI 5.23(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2182Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
21311031(chloroplasts)
21173025(root proteome)

Comparative Proteomics Data

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