PPDB

The Plant Proteome Database

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AT3G04780.1   PITH domain protein (DUF1000)

Lab Annot. unknown protein DUF1000 domain
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G25950.1 11Arabidopsis thaliana3E-11158325015 (11)_
AT2G25950.2 11Arabidopsis thaliana4E-1115832500 (0)_
Os03g58130.1 7Oryza sativa2E-89169728733 (33)S
Os01g37832.1 7Oryza sativa2E-10156315113 (13)_
Os01g37832.2 7Oryza sativa2E-10156315113 (13)_
v1_GRMZM2G099474_P01 4a53Zea mays1E-91170738712 (12)_
Zm00001eb213000_P002 agpv5Zea mays1E-9117073870 (0)_
GRMZM2G099474_P01 3.21Zea mays1E-91170738711 (10)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: PITH(1)
TargetP: Cytoplasm (Class 2 C0.142; M0.097; S0.140; _0.765)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 176 aa (-cTP 174)
Molecular Weight 19.67 kDA(-cTP )
PI 4.94(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
622Detail       leaf [A. thaliana] total leaf tissue wild-type
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1410Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 wild-type
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1432Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
1532Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2246Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)

Comparative Proteomics Data


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