PPDB

The Plant Proteome Database

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AT3G04770.2   40s ribosomal protein SA B

Lab Annot.
Mapman: 29.2.1.2.1.31 protein.synthesis.ribosomal protein.eukaryotic.40S subunit.SA
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G72370.2 11Arabidopsis thaliana4E-1612588489893 (539)_
AT1G72370.1 11Arabidopsis thaliana7E-1612588489893 (539)_
AT3G04770.1 11Arabidopsis thaliana1E-152205991009 (7)_
Os07g42450.1 7Oryza sativa7E-134277738143 (43)_
Os03g08440.2 7Oryza sativa1E-132199879536 (36)_
Os03g08440.1 7Oryza sativa1E-132275697936 (36)_
Zm00001eb401700_P002 agpv5Zea mays1E-14129272800 (0)_
Zm00001eb401700_P001 agpv5Zea mays3E-13930868760 (0)_
GRMZM2G099657_P01 3.21Zea mays3E-1393086876287 (185)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: 40S_SA_C(1) Ribosomal_S2(2)
TargetP: Cytoplasm (Class 2 C0.046; M0.182; S0.108; _0.900)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 280 aa (-cTP 278)
Molecular Weight 30.65 kDA(-cTP )
PI 5.04(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1744Detail        [A. thaliana] Mep-6
1875Detail       Total leaf [A. thaliana] total soluble wild-type
2182Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2184Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2191Detail        [A. thaliana] plastid stroma stromaP3-trap-strepII 40

* For details about the exprimental sources click here.

Published Proteomics Data

15028209(Total chloroplast)
15734919(80S cytolic ribosomes)
17934214(cytosolic ribosome)
17432890(leaf total membranes)
20118269(developing seeds)
19888209(80S polysomal fraction)
19114538(guard cells Arabidopsis leaf)
21173025(root proteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data


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