PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G04770.1   40s ribosomal protein SA B

Lab Annot. RPSAB (40S RIBOSOMAL PROTEIN SA B); structural constituent of ribosome
Mapman: 29.2.1.2.1.31 protein.synthesis.ribosomal protein.eukaryotic.40S subunit.SA
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G04770.2 11Arabidopsis thaliana1E-152205991008 (7)_
AT1G72370.2 11Arabidopsis thaliana2E-1342058894824 (566)_
AT1G72370.1 11Arabidopsis thaliana2E-1342058894824 (566)_
Os03g08440.2 7Oryza sativa4E-126193879536 (36)_
Os03g08440.1 7Oryza sativa7E-126193879536 (36)_
Os07g42450.1 7Oryza sativa8E-126193889543 (43)_
Zm00001eb401700_P002 agpv5Zea mays2E-12920585930 (0)_
Zm00001eb401700_P001 agpv5Zea mays3E-12920585930 (0)_
GRMZM2G099657_P01 3.21Zea mays4E-1292058593213 (185)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Ribosomal_S2(2)
TargetP: Cytoplasm (Class 2 C0.046; M0.182; S0.108; _0.900)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 332 aa (-cTP 330)
Molecular Weight 37.30 kDA(-cTP )
PI 9.67(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1744Detail        [A. thaliana] Mep-6
1875Detail       Total leaf [A. thaliana] total soluble wild-type
2182Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2184Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2191Detail        [A. thaliana] plastid stroma stromaP3-trap-strepII 40

* For details about the exprimental sources click here.

Published Proteomics Data

15028209(Total chloroplast)
15734919(80S cytolic ribosomes)
17934214(cytosolic ribosome)
17432890(leaf total membranes)
20118269(developing seeds)
19888209(80S polysomal fraction)
19114538(guard cells Arabidopsis leaf)
21173025(root proteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help