PPDB

PPDB	The Plant Proteome Database

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AT3G04760.1 Pentatricopeptide repeat (PPR-like) superfamily protein

Lab Annot.

pentatricopeptide repeat (PPR) protein
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein

Curated Location

plastid nucleoid (Pubmed: 23198870 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G04760.2 11 Arabidopsis thaliana 0 607 85 87 0 (0) C
AT1G09900.1 11 Arabidopsis thaliana 2E-151 489 44 64 2 (2) _
AT1G79080.1 11 Arabidopsis thaliana 4E-96 491 35 54 3 (3) C
Os02g35750.1 7 Oryza sativa 2E-132 469 41 62 0 (0) C
Os02g35750.2 7 Oryza sativa 2E-132 469 41 62 0 (0) C
Os01g57410.2 7 Oryza sativa 3E-101 465 36 56 0 (0) C
v1_GRMZM2G127963_P01 4a53 Zea mays 1E-132 512 40 59 8 (8) C
Zm00001eb244420_P001 agpv5 Zea mays 1E-132 512 40 59 0 (0) C
GRMZM2G127963_P01 3.21 Zea mays 1E-132 512 40 59 9 (9) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Alba(1) Clathrin(4) Coatomer_E(3) DNA_pol3_delt_C(2) ECSIT(4) Glyco_trans_4_3(3)
TargetP:	Chloroplast (Class 2 C0.773; M0.052; S0.010; _0.168)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	602 aa (-cTP 524)
Molecular Weight	67.69 kDA(-cTP 59.17)
PI	5.76(-cTP 5.37)

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
541	Detail								leaf [A. thaliana]	stroma (FPLC) >1 MDa stroma	wild-type
543	Detail								leaf [A. thaliana]	stroma (FPLC) >600 kDa (HMA)	wild-type
640	Detail								leaf [A. thaliana]	plastid nucleoid	wild-type
1175	Detail								leaf [A. thaliana]	co-IP RH3 stroma	wild-type
1178	Detail								leaf [A. thaliana]	co-IP RH3 stroma	clpr2-1
1179	Detail								leaf [A. thaliana]	co-IP ClpR2 stroma	clpr2-1
1196	Detail								leaf [A. thaliana]	co-IP RH3 stroma	clpr2-1
1197	Detail								leaf [A. thaliana]	co-IP ClpR2 stroma	clpr2-1
1453	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1454	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 2)
1525	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1635	Detail								leaf [A. thaliana]	Stroma stroma	clpt1-2
1636	Detail								leaf [A. thaliana]	Stroma stroma	clpt1-2
1640	Detail								leaf [A. thaliana]	total leaf tissue stroma	clpt2-1
2321	Detail								leaf [A. thaliana]
2324	Detail								leaf [A. thaliana]	THYLAKOIDS thylakoid membrane
2325	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane	abc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

15028209(Total chloroplast)
20423899(chloroplast)
19995723(chloroplast reference proteome)

Comparative Proteomics Data